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1

Habitat structure determines resource use by zooplankton in temperate lakes

Tessa B. Francis, Daniel E. Schindler, Gordon W. Holtgrieve, Eric R. Larson, Mark D. Scheuerell, Brice X. Semmens, Eric J. Ward

Journal:

Ecology Letters

Year:

2011

Language:

english

File:

PDF, 869 KB

english, 2011

2

Bayesian stable isotope mixing models

Parnell, Andrew C., Phillips, Donald L., Bearhop, Stuart, Semmens, Brice X., Ward, Eric J., Moore, Jonathan W., Jackson, Andrew L., Grey, Jonathan, Kelly, David J., Inger, Richard

Journal:

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

3

Best practices for use of stable isotope mixing models in food-web studies

Phillips, Donald L., Inger, Richard, Bearhop, Stuart, Jackson, Andrew L., Moore, Jonathan W., Parnell, Andrew C., Semmens, Brice X., Ward, Eric J.

Journal:

Canadian Journal of Zoology

Year:

2014

Language:

english

File:

PDF, 631 KB

english, 2014

4

Growth: Theory, estimation, and application in fishery stock assessment models

Maunder, Mark N., Crone, Paul R., Punt, Andre E., Valero, Juan L., Semmens, Brice X.

Journal:

Fisheries Research

Year:

2016

Language:

english

File:

PDF, 214 KB

english, 2016

5

A trans-national monarch butterfly population model and implications for regional conservation priorities

OBERHAUSER, KAREN, WIEDERHOLT, RUSCENA, DIFFENDORFER, JAY E., SEMMENS, DARIUS, RIES, LESLIE, THOGMARTIN, WAYNE E., LOPEZ-HOFFMAN, LAURA, SEMMENS, BRICE

Journal:

Ecological Entomology

Year:

2016

Language:

english

File:

PDF, 876 KB

english, 2016

6

Pattern in the Co-occurrence of Fishes Inhabiting the Coral Reefs of Bonaire, Netherlands Antilles

Peter J. Auster, Brice X. Semmens, Kimberly Barber

Journal:

Environmental Biology of Fishes

Year:

2005

Language:

english

File:

PDF, 267 KB

english, 2005

7

Interpreting Space Use and Behavior of Blue Tang,Acanthurus coeruleus, in the Context of Habitat, Density, and Intra-specific Interactions

Brice X. Semmens, Daniel R. Brumbaugh, Joshua A. Drew

Journal:

Environmental Biology of Fishes

Year:

2005

Language:

english

File:

PDF, 243 KB

english, 2005

8

Incorporating uncertainty and prior information into stable isotope mixing models

Jonathan W. Moore, Brice X. Semmens

Journal:

Ecology Letters

Year:

2008

Language:

english

File:

PDF, 306 KB

english, 2008

9

Improving Bayesian isotope mixing models: a response to

Brice X. Semmens, Jonathan W. Moore, Eric J. Ward

Journal:

Ecology Letters

Year:

2009

Language:

english

File:

PDF, 53 KB

english, 2009

10

Incorporating Human and Ecological Communities in Marine Conservation: an Alternative to Zacharias and Roff

Anne K. Salomon, Jennifer L. Ruesink, Brice X. Semmens, Robert T. Paine

Journal:

Conservation Biology

Year:

2001

Language:

english

File:

PDF, 596 KB

english, 2001

11

Effects of Multiple Levels of Social Organization on Survival and Abundance

ERIC J. WARD, BRICE X. SEMMENS, ELIZABETH E. HOLMES, KEN C. BALCOMB III

Journal:

Conservation Biology

Year:

2011

Language:

english

File:

PDF, 432 KB

english, 2011

12

Conservation and Management Applications of the Reef Volunteer Fish Monitoring Program

Christy V. Pattengill-Semmens, Brice X. Semmens

Journal:

Environmental Monitoring and Assessment

Year:

2003

Language:

english

File:

PDF, 61 KB

english, 2003

13

Observations of a Nassau grouper,Epinephelus striatus, Spawning Aggregation Site in Little Cayman, Cayman Islands, Including Multi-Species Spawning Information

Leslie Whaylen, Christy V. Pattengill-Semmens, Brice X. Semmens, Phillippe G. Bush, Mark R. Boardman

Journal:

Environmental Biology of Fishes

Year:

2004

Language:

english

File:

PDF, 211 KB

english, 2004

14

Documenting recovery of a spawning aggregation through size frequency analysis from underwater laser calipers measurements

Heppell, Scott A., Semmens, Brice X., Archer, Stephanie K., Pattengill-Semmens, Christy V., Bush, Philippe G., McCoy, Croy M., Heppell, Selina S., Johnson, Bradley C.

Journal:

Biological Conservation

Year:

2012

Language:

english

File:

PDF, 639 KB

english, 2012

15

Including Source Uncertainty and Prior Information in the Analysis of Stable Isotope Mixing Models

Ward, Eric J., Semmens, Brice X., Schindler, Daniel E.

Journal:

Environmental Science & Technology

Year:

2010

Language:

english

File:

PDF, 550 KB

english, 2010

16

A mixing model to incorporate uncertainty in sediment fingerprinting

Nosrati, Kazem, Govers, Gerard, Semmens, Brice X., Ward, Eric J.

Journal:

Year:

2014

Language:

english

File:

PDF, 696 KB

english, 2014

17

Using areas-as-fleets selectivity to model spatial fishing: Asymptotic curves are unlikely under equilibrium conditions

Waterhouse, Lynn, Sampson, David B., Maunder, Mark, Semmens, Brice X.

Journal:

Fisheries Research

Year:

2014

Language:

english

File:

PDF, 757 KB

english, 2014

18

Acoustically derived fine-scale behaviors of juvenile Chinook salmon (Oncorhynchus tshawytscha) associated with intertidal benthic habitats in an estuary

Semmens, Brice Xavier

Journal:

Canadian Journal of Fisheries and Aquatic Sciences

Year:

2008

Language:

english

File:

PDF, 2.25 MB

english, 2008

19

National Valuation of Monarch Butterflies Indicates an Untapped Potential for Incentive-Based Conservation

Diffendorfer, Jay E., Loomis, John B., Ries, Leslie, Oberhauser, Karen, Lopez-Hoffman, Laura, Semmens, Darius, Semmens, Brice, Butterfield, Bruce, Bagstad, Ken, Goldstein, Josh, Wiederholt, Ruscena, M

Journal:

Conservation Letters

Year:

2014

Language:

english

File:

PDF, 852 KB

english, 2014

20

Phenotypic variation and selective mortality as major drivers of recruitment variability in fishes

Johnson, Darren W., Grorud-Colvert, Kirsten, Sponaugle, Su, Semmens, Brice X., Heino, Mikko

Journal:

Ecology Letters

Year:

2014

Language:

english

File:

PDF, 634 KB

english, 2014

21

Assessing the effects of large mobile predators on ecosystem connectivity

McCauley, Douglas J., Young, Hillary S., Dunbar, Robert B., Estes, James A., Semmens, Brice X., Micheli, Fiorenza

Journal:

Ecological Applications

Year:

2012

Language:

english

File:

PDF, 3.35 MB

english, 2012

22

Demographic modeling of citizen science data informs habitat preferences and population dynamics of recovering fishes

Thorson, James T., Scheuerell, Mark D., Semmens, Brice X., Pattengill-Semmens, Christy V.

Journal:

Year:

2014

Language:

english

File:

PDF, 6.26 MB

english, 2014

23

Hot moments in spawning aggregations: implications for ecosystem-scale nutrient cycling

Archer, Stephanie K., Allgeier, Jacob E., Semmens, Brice X., Heppell, Scott A., Pattengill-Semmens, Christy V., Rosemond, Amy D., Bush, Phillippe G., McCoy, Croy M., Johnson, Bradley C., Layman, Craig

Journal:

Year:

2015

Language:

english

File:

PDF, 221 KB

english, 2015

24

Using Stable Isotope Analysis to Understand the Migration and Trophic Ecology of Northeastern Pacific White Sharks (Carcharodon carcharias)

Carlisle, Aaron B., Kim, Sora L., Semmens, Brice X., Madigan, Daniel J., Jorgensen, Salvador J., Perle, Christopher R., Anderson, Scot D., Chapple, Taylor K., Kanive, Paul E., Block, Barbara A., Roman

Journal:

Year:

2012

Language:

english

File:

PDF, 821 KB

english, 2012

25

Flexible risk metrics for identifying and monitoring conservation-priority species

Stanton, Jessica C., Semmens, Brice X., McKann, Patrick C., Will, Tom, Thogmartin, Wayne E.

Journal:

Ecological Indicators

Year:

2016

Language:

english

File:

PDF, 1.33 MB

english, 2016

26

Patterns of color phase indicate spawn timing at a Nassau grouper Epinephelus striatus spawning aggregation

Archer, Stephanie K, Heppell, Scott A, Semmens, Brice X, Pattengill-Semmens, Christy V, Bush, Phillippe G, Mccoy, Croy M, Johnson, Bradley C

Journal:

Current Zoology

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

27

Analyzing large-scale conservation interventions with Bayesian hierarchical models: a case study of supplementing threatened Pacific salmon

Scheuerell, Mark D., Buhle, Eric R., Semmens, Brice X., Ford, Michael J., Cooney, Tom, Carmichael, Richard W.

Journal:

Ecology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.78 MB

english, 2015

28

Spatial ecology and conservation of Manta birostris in the Indo-Pacific

Stewart, Joshua D., Beale, Calvin S., Fernando, Daniel, Sianipar, Abraham B., Burton, Ronald S., Semmens, Brice X., Aburto-Oropeza, Octavio

Journal:

Biological Conservation

Year:

2016

Language:

english

File:

PDF, 551 KB

english, 2016

29

Unifying error structures in commonly used biotracer mixing models

Stock, Brian C., Semmens, Brice X.

Journal:

Year:

2016

Language:

english

File:

PDF, 532 KB

english, 2016

30

Assessing the effects of large mobile predators on ecosystem connectivity

Douglas J. McCauley, Hillary S. Young, Robert B. Dunbar, James A. Estes, Brice X. Semmens and Fiorenza Micheli

Journal:

Ecological Applications

Year:

2012

Language:

english

File:

PDF, 2.13 MB

english, 2012

31

Long-Term Dynamics in “Trophy” Sizes of Pelagic and Coastal Pelagic Fishes among California Recreational Fisheries (1966–2013)

Bellquist, Lyall F., Graham, Jeffrey B., Barker, Amanda, Ho, Jason, Semmens, Brice X.

Journal:

Transactions of the American Fisheries Society

Year:

2016

Language:

english

File:

PDF, 919 KB

english, 2016

32

Incorporating Human and Ecological Communities in Marine Conservation: An Alternative to Zacharias and Roff

Anne K. Salomon, Jennifer L. Ruesink, Brice X. Semmens and Robert T. Paine

Journal:

Conservation Biology

Year:

2001

Language:

english

File:

PDF, 1.15 MB

english, 2001

33

A quantitative approach to combine sources in stable isotope mixing models

Ward, Eric J., Semmens, Brice X., Phillips, Donald L., Moore, Jonathan W., Bouwes, Nicolaas

Journal:

Year:

2011

Language:

english

File:

PDF, 1.96 MB

english, 2011

34

Data conflict and weighting, likelihood functions and process error

Maunder, Mark N., Crone, Paul R., Punt, Andre E., Valero, Juan L., Semmens, Brice X.

Journal:

Fisheries Research

Year:

2017

Language:

english

File:

PDF, 252 KB

english, 2017

35

Methodological perspectives on the application of compound-specific stable isotope fingerprinting for sediment source apportionment

Upadhayay, Hari R., Bodé, Samuel, Griepentrog, Marco, Huygens, Dries, Bajracharya, Roshan M., Blake, William H., Dercon, Gerd, Mabit, Lionel, Gibbs, Max, Semmens, Brice X., Stock, Brian C., Cornelis,

Journal:

Journal of Soils and Sediments

Year:

2017

Language:

english

File:

PDF, 1.10 MB

english, 2017

36

Quasi-extinction risk and population targets for the Eastern, migratory population of monarch butterflies (Danaus plexippus)

Semmens, Brice X., Semmens, Darius J., Thogmartin, Wayne E., Wiederholt, Ruscena, López-Hoffman, Laura, Diffendorfer, Jay E., Pleasants, John M., Oberhauser, Karen S., Taylor, Orley R.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 493 KB

english, 2016

37

Monarch butterfly population decline in North America: identifying the threatening processes

Thogmartin, Wayne E., Wiederholt, Ruscena, Oberhauser, Karen, Drum, Ryan G., Diffendorfer, Jay E., Altizer, Sonia, Taylor, Orley R., Pleasants, John, Semmens, Darius, Semmens, Brice, Erickson, Richard

Journal:

Royal Society Open Science

Year:

2017

Language:

english

File:

PDF, 1.08 MB

english, 2017

38

Impacts of recently implemented recreational fisheries regulations on the Commercial Passenger Fishing Vessel fishery for Paralabrax sp. in California

Bellquist, Lyall, Semmens, Brice, Stohs, Stephen, Siddall, Alayna

Journal:

Year:

2017

Language:

english

File:

PDF, 2.14 MB

english, 2017

39

Quantifying ecosystem service flows at multiple scales across the range of a long-distance migratory species

Semmens, Darius J., Diffendorfer, Jay E., Bagstad, Kenneth J., Wiederholt, Ruscena, Oberhauser, Karen, Ries, Leslie, Semmens, Brice X., Goldstein, Joshua, Loomis, John, Thogmartin, Wayne E., Mattsson,

Journal:

Ecosystem Services

Year:

2018

Language:

english

File:

PDF, 2.47 MB

english, 2018

40

Merging Resource Availability with Isotope Mixing Models: The Role of Neutral Interaction Assumptions

Yeakel, Justin D., Novak, Mark, Guimarães, Paulo R., Dominy, Nathaniel J., Koch, Paul L., Ward, Eric J., Moore, Jonathan W., Semmens, Brice X., Thrush, Simon

Journal:

Year:

2011

Language:

english

File:

PDF, 408 KB

english, 2011

41

Population Structure and Phylogeography in Nassau Grouper (Epinephelus striatus), a Mass-Aggregating Marine Fish

Jackson, Alexis M., Semmens, Brice X., Sadovy de Mitcheson, Yvonne, Nemeth, Richard S., Heppell, Scott A., Bush, Phillippe G., Aguilar-Perera, Alfonso, Claydon, John A. B., Calosso, Marta C., Sealey,

Journal:

Year:

2014

Language:

english

File:

PDF, 615 KB

english, 2014

42

The utility of spatial model-based estimators of unobserved bycatch

Stock, Brian C, Ward, Eric J, Thorson, James T, Jannot, Jason E, Semmens, Brice X

Journal:

ICES Journal of Marine Science

Year:

2018

Language:

english

File:

PDF, 3.03 MB

english, 2018

43

Comparing predictions of fisheries bycatch using multiple spatiotemporal species distribution model frameworks

Stock, Brian C, Ward, Eric J., Eguchi, Tomoharu, Jannot, Jason E, Thorson, James T, Feist, Blake E, Semmens, Brice X

Journal:

Canadian Journal of Fisheries and Aquatic Sciences

Year:

2019

Language:

english

File:

PDF, 10.12 MB

english, 2019

44

[IEEE OCEANS 2019 MTS/IEEE SEATTLE - Seattle, WA, USA (2019.10.27-2019.10.31)] OCEANS 2019 MTS/IEEE SEATTLE - Development and evaluation of a passive acoustic localization method to monitor fish spawning aggregations and measure source levels

Wilson, Katherine C., Semmens, Brice X., Gittings, Stephen R., Pattengill-Semmens, Christy, Sirovic, Ana

Year:

2019

File:

PDF, 1.69 MB

2019

45

Recovery of critically endangered Nassau grouper ( Epinephelus striatus ) in the Cayman Islands following targeted conservation actions

Waterhouse, Lynn, Heppell, Scott A., Pattengill-Semmens, Christy V., McCoy, Croy, Bush, Phillippe, Johnson, Bradley C., Semmens, Brice X.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 864 KB

2020

46

A Bayesian nested patch occupancy model to estimate steelhead movement and abundance

Waterhouse, Lynn, White, Jody, See, Kevin, Murdoch, Andrew, Semmens, Brice X.

Journal:

Ecological Applications

Year:

2020

File:

PDF, 11.84 MB

2020

47

Allele specific expression and evolution of gene regulation underlying acute heat stress response and local adaptation in the copepod Tigriopus californicus

Tangwancharoen, Sumaetee, Semmens, Brice X, Burton, Ronald S

Journal:

Journal of Heredity

Year:

2020

File:

PDF, 1.04 MB

2020

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